Please continue discussion about waypoints here: Adding javascript files (Waypoints) (that’s my post which should solve it for you, thank you @buswell for helping). Let’s keep this to Bower documentation.
On that note, I have proposed a blog post to help people with wrapping their heads around how all of this works, because we get far too many of the “how do I add js/css/this-library/that-library” threads. I will try to get to that ASAP.