Sync Script location

Should sync script go in the root of bedrock project? project-root/site/scripts/ .

Do you mean the script that syncs the database + uploads/ files from one server to another?
I put that script into the project folder where also the wp-cli.yml and .env file is.

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While on the topic of the sync script, it would be awesome if this was configured to work with multisite networks. Any possible plans for that in the future?